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  1. Home > Articles & Issues >
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  3. Cellular Automata fo ...
Conference paper

Cellular Automata for Simulating Molecular Self-Assembly

Martin Nilsson (1), Steen Rasmussen (1)
(1) Los Alamos National Laboratory
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Imported on
November 21, 2016
Published on
December 31, 2002
Last modified on
March 31, 2025
Volume 0
DMTCS Proceedings vol. AB, Discrete Models for Complex Systems (DMCS'03)
Proceedings
DOI
10.46298/dmtcs.2309
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https://about.hal.science/hal-authorisation-v1
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Cellular Automata for Simulating Molecular Self-Assembly

Martin Nilsson (1), Steen Rasmussen (1)
(1) Los Alamos National Laboratory
Abstract
We present a lattice gas technique for simulating molecular self-assembly of amphiphilic polymers in aqueous environments. Water molecules, hydrocarbons tail-groups and amphiphilic head-groups are explicitly represented on a three dimensional discrete lattice. Molecules move on the lattice proportional to their continuous momentum. Collision rules preserve momentum and kinetic energy. Potential energy from molecular interactions are also included explicitly. Non-trivial thermodynamics of large scale and long time dynamics are studied. In this paper we specifically demonstrate how, from a random initial distribution, micelles are formed, and grow until they destabilize and divide. Eventually a steady state of growing and dividing micelles is formed.
Keywords
  • [INFO.INFO-DM]Computer Science [cs]/Discrete Mathematics [cs.DM]
  • [MATH.MATH-CO]Mathematics [math]/Combinatorics [math.CO]
  • [NLIN.NLIN-CG]Nonlinear Sciences [physics]/Cellular Automata and Lattice Gases [nlin.CG]
  • [INFO.INFO-HC]Computer Science [cs]/Human-Computer Interaction [cs.HC]
  • Cellular Automata
  • Lattice Gas
  • Molecular Self-Assembly
  • Statistical Mechanics
  • Thermodynamics
Mathematics Subject Classification 2020
  • 05A05 - Permutations, words, matrices
  • 05A15 - Exact enumeration problems, generating functions
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