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  1. Home > Articles & Issues >
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  3. Analysis of the aver ...
Conference paper

Analysis of the average depth in a suffix tree under a Markov model

Julien Fayolle (1), Mark Daniel Ward (2) (3)
(1) Algorithms
(2) Department of mathematics Purdue University
(3) Department of Mathematics [West Lafayette]
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Imported on
May 10, 2017
Published on
December 31, 2004
Last modified on
March 31, 2025
Volume 0
DMTCS Proceedings vol. AD, International Conference on Analysis of Algorithms
Proceedings
DOI
10.46298/dmtcs.3371
License
https://about.hal.science/hal-authorisation-v1
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Analysis of the average depth in a suffix tree under a Markov model

Julien Fayolle (1), Mark Daniel Ward (2) (3)
(1) Algorithms
(2) Department of mathematics Purdue University
(3) Department of Mathematics [West Lafayette]
Abstract
In this report, we prove that under a Markovian model of order one, the average depth of suffix trees of index n is asymptotically similar to the average depth of tries (a.k.a. digital trees) built on n independent strings. This leads to an asymptotic behavior of $(\log{n})/h + C$ for the average of the depth of the suffix tree, where $h$ is the entropy of the Markov model and $C$ is constant. Our proof compares the generating functions for the average depth in tries and in suffix trees; the difference between these generating functions is shown to be asymptotically small. We conclude by using the asymptotic behavior of the average depth in a trie under the Markov model found by Jacquet and Szpankowski ([JaSz91]).
Keywords
  • [INFO.INFO-DS]Computer Science [cs]/Data Structures and Algorithms [cs.DS]
  • [INFO.INFO-DM]Computer Science [cs]/Discrete Mathematics [cs.DM]
  • [MATH.MATH-CO]Mathematics [math]/Combinatorics [math.CO]
  • [INFO.INFO-CG]Computer Science [cs]/Computational Geometry [cs.CG]
  • [INFO.INFO-HC]Computer Science [cs]/Human-Computer Interaction [cs.HC]
  • analytic methods
  • Suffix trees
  • depth
  • average analysis
  • asymptotics
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