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  1. Home > Articles & Issues >
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  3. Generalized Fitch Gr ...
Article

Generalized Fitch Graphs III: Symmetrized Fitch maps and Sets of Symmetric Binary Relations that are explained by Unrooted Edge-labeled Trees

Marc Hellmuth, Carsten R. Seemann ORCID, Peter F. Stadler ORCID
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Submitted on
January 21, 2020
Accepted on
May 10, 2021
Published on
June 3, 2021
Last modified on
March 31, 2025
Volume 23
vol. 23:1
Graph Theory
DOI
10.46298/dmtcs.6040
License
Attribution-Non Commercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
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Generalized Fitch Graphs III: Symmetrized Fitch maps and Sets of Symmetric Binary Relations that are explained by Unrooted Edge-labeled Trees

Marc Hellmuth, Carsten R. Seemann ORCID, Peter F. Stadler ORCID
Abstract
Binary relations derived from labeled rooted trees play an import role in mathematical biology as formal models of evolutionary relationships. The (symmetrized) Fitch relation formalizes xenology as the pairs of genes separated by at least one horizontal transfer event. As a natural generalization, we consider symmetrized Fitch maps, that is, symmetric maps $\varepsilon$ that assign a subset of colors to each pair of vertices in $X$ and that can be explained by a tree $T$ with edges that are labeled with subsets of colors in the sense that the color $m$ appears in $\varepsilon(x,y)$ if and only if $m$ appears in a label along the unique path between $x$ and $y$ in $T$. We first give an alternative characterization of the monochromatic case and then give a characterization of symmetrized Fitch maps in terms of compatibility of a certain set of quartets. We show that recognition of symmetrized Fitch maps is NP-complete. In the restricted case where $|\varepsilon(x,y)|\leq 1$ the problem becomes polynomial, since such maps coincide with class of monochromatic Fitch maps whose graph-representations form precisely the class of complete multi-partite graphs.
Keywords
  • Computer Science - Discrete Mathematics
  • Computer Science - Computational Complexity
  • Computer Science - Data Structures and Algorithms
  • Mathematics - Combinatorics
  • 68R01, 05C05, 92D15
Mathematics Subject Classification 2020
  • 05C05 - Trees
  • 05C78 - Graph labelling (graceful graphs, bandwidth, etc.)
  • 05C85 - Graph algorithms (graph-theoretic aspects)
  • 68Q17 - Computational difficulty of problems (lower bounds, completeness, difficulty of approximation, etc.)
  • 92D10 - Genetics and epigenetics
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Source: OpenCitations

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