Analysis of the average depth in a suffix tree under a Markov modelConference paper
Authors: Julien Fayolle 1; Mark Daniel Ward 2
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Julien Fayolle;Mark Daniel Ward
- 1 Algorithms
- 2 Department of mathematics Purdue University
In this report, we prove that under a Markovian model of order one, the average depth of suffix trees of index n is asymptotically similar to the average depth of tries (a.k.a. digital trees) built on n independent strings. This leads to an asymptotic behavior of $(\log{n})/h + C$ for the average of the depth of the suffix tree, where $h$ is the entropy of the Markov model and $C$ is constant. Our proof compares the generating functions for the average depth in tries and in suffix trees; the difference between these generating functions is shown to be asymptotically small. We conclude by using the asymptotic behavior of the average depth in a trie under the Markov model found by Jacquet and Szpankowski ([JaSz91]).
Volume: DMTCS Proceedings vol. AD, International Conference on Analysis of Algorithms
Section: Proceedings
Published on: January 1, 2005
Imported on: May 10, 2017
Keywords: [INFO.INFO-DS]Computer Science [cs]/Data Structures and Algorithms [cs.DS], [INFO.INFO-DM]Computer Science [cs]/Discrete Mathematics [cs.DM], [MATH.MATH-CO]Mathematics [math]/Combinatorics [math.CO], [INFO.INFO-CG]Computer Science [cs]/Computational Geometry [cs.CG], [INFO.INFO-HC]Computer Science [cs]/Human-Computer Interaction [cs.HC], [en] analytic methods, Suffix trees, depth, average analysis, asymptotics